Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dsba family protein | F126LOC_RS03720 | Not Available | Negative | 840416 - 841072 | 23741.3 |
| mbl fold metallo-hydrolase | F126LOC_RS03725 | Not Available | Negative | 841060 - 841941 | 31767.1 |
| lysr family transcriptional regulator | F126LOC_RS03730 | Not Available | Positive | 842049 - 842969 | 33973.2 |
| lysr family transcriptional regulator | F126LOC_RS03735 | Not Available | Negative | 842998 - 843921 | 34052.4 |
| diaminopimelate decarboxylase | F126LOC_RS03740 | Not Available | Positive | 844072 - 845334 | 45996.8 |
| dmt family transporter | F126LOC_RS03745 | Not Available | Negative | 845331 - 846287 | 33838.4 |
| helix-turn-helix domain-containing protein | F126LOC_RS03750 | Not Available | Positive | 846411 - 847004 | 21373.5 |
| laci family dna-binding transcriptional regulator | F126LOC_RS03755 | Not Available | Negative | 847058 - 848071 | 37367.0 |
| pts lactose/cellobiose transporter subunit iia | F126LOC_RS03760 | Not Available | Negative | 848205 - 848549 | 12715.3 |
| pts sugar transporter subunit iic | F126LOC_RS03765 | Not Available | Positive | 848804 - 850141 | 48254.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
