Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta hydrolase | F126LOC_RS03620 | Not Available | Positive | 824067 - 824925 | 31819.0 |
| duf1240 domain-containing protein | F126LOC_RS03625 | Not Available | Positive | 824918 - 825328 | 15819.6 |
| duf1240 domain-containing protein | F126LOC_RS03630 | Not Available | Positive | 825360 - 825767 | 15447.8 |
| duf1240 domain-containing protein | F126LOC_RS03635 | Not Available | Positive | 825813 - 826220 | 15778.5 |
| hcp family type vi secretion system effector | F126LOC_RS03640 | Not Available | Negative | 826270 - 826749 | 17931.3 |
| m48 family metallopeptidase | F126LOC_RS03645 | Not Available | Negative | 826874 - 827371 | 19313.3 |
| aromatic amino acid transaminase | F126LOC_RS03650 | Not Available | Negative | 827455 - 828648 | 43950.5 |
| yitt family protein | F126LOC_RS03655 | Not Available | Negative | 828712 - 829326 | 22342.2 |
| lrp/asnc family transcriptional regulator | F126LOC_RS03660 | Not Available | Negative | 829577 - 830056 | 17609.5 |
| type ii toxin-antitoxin system vapb family antitoxin | F126LOC_RS03665 | Not Available | Positive | 830973 - 831200 | 8879.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
