Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter substrate-binding protein | F126LOC_RS03470 | Not Available | Negative | 784666 - 785973 | 48890.2 |
| hypothetical protein | F126LOC_RS03475 | Not Available | Positive | 786427 - 788889 | 92026.3 |
| glycoside hydrolase family 105 protein | F126LOC_RS03480 | Not Available | Positive | 788891 - 789997 | 41022.8 |
| abc transporter atp-binding protein | F126LOC_RS03485 | Not Available | Positive | 790000 - 791091 | 40551.3 |
| carbohydrate abc transporter permease | F126LOC_RS03490 | Not Available | Positive | 791115 - 792113 | 36862.0 |
| carbohydrate abc transporter permease | F126LOC_RS03495 | Not Available | Positive | 792122 - 793174 | 39386.3 |
| laci family dna-binding transcriptional regulator | F126LOC_RS03500 | Not Available | Positive | 793174 - 794223 | 38176.4 |
| plp-dependent aminotransferase family protein | F126LOC_RS03505 | Not Available | Negative | 794265 - 795683 | 52264.1 |
| gnat family n-acetyltransferase | F126LOC_RS03510 | Not Available | Positive | 795775 - 796212 | 16270.7 |
| carboxymuconolactone decarboxylase family protein | F126LOC_RS03515 | Not Available | Positive | 796347 - 796778 | 15746.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
