Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-threonate kinase | F126LOC_RS03420 | Not Available | Positive | 774423 - 775751 | 46639.5 |
| d-threonate 4-phosphate dehydrogenase | F126LOC_RS03425 | Not Available | Positive | 775744 - 776724 | 34975.7 |
| deor/glpr family dna-binding transcription regulator | F126LOC_RS03430 | Not Available | Positive | 776882 - 777697 | 29604.6 |
| lipocalin-like domain-containing protein | F126LOC_RS03435 | Not Available | Negative | 777738 - 778208 | 17646.7 |
| metal abc transporter substrate-binding protein | F126LOC_RS03440 | Not Available | Negative | 778316 - 779194 | 31440.2 |
| metal abc transporter permease | F126LOC_RS03445 | Not Available | Negative | 779236 - 780090 | 30270.6 |
| metal abc transporter atp-binding protein | F126LOC_RS03450 | Not Available | Negative | 780087 - 780797 | 25567.0 |
| metallophosphoesterase | F126LOC_RS03455 | Not Available | Negative | 781360 - 783183 | 67622.4 |
| badf/badg/bcra/bcrd atpase family protein | F126LOC_RS03460 | Not Available | Negative | 783225 - 784121 | 31330.8 |
| glucosamine kinase | F126LOC_RS03465 | Not Available | Negative | 784118 - 784669 | 20068.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
