Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dmt family transporter | F126LOC_RS03370 | Not Available | Negative | 763264 - 763590 | 11811.1 |
| dmt family transporter | F126LOC_RS03375 | Not Available | Negative | 763608 - 764024 | 15213.0 |
| choline tma-lyase-activating enzyme | F126LOC_RS03380 | Not Available | Negative | 764071 - 765021 | 35754.2 |
| choline trimethylamine-lyase | F126LOC_RS03385 | Not Available | Negative | 765097 - 767592 | 93327.5 |
| sdr family nad(p)-dependent oxidoreductase | F126LOC_RS03390 | Not Available | Negative | 768184 - 768873 | 23821.9 |
| yhch/yjgk/yial family protein | F126LOC_RS03395 | Not Available | Negative | 768925 - 769392 | 17040.4 |
| sialidase family protein | F126LOC_RS03400 | Not Available | Negative | 769455 - 770642 | 43913.3 |
| sodium:solute symporter family protein | F126LOC_RS03405 | Not Available | Negative | 770646 - 772061 | 51270.1 |
| dihydrodipicolinate synthase family protein | F126LOC_RS03410 | Not Available | Negative | 772100 - 772984 | 31731.9 |
| iron-containing alcohol dehydrogenase | F126LOC_RS03415 | Not Available | Negative | 773051 - 774187 | 40645.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
