Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| serine hydrolase domain-containing protein | F126LOC_RS03270 | Not Available | Positive | 737490 - 738683 | 42349.1 |
| mfs transporter | F126LOC_RS03275 | Not Available | Positive | 738680 - 739864 | 40812.4 |
| hypothetical protein | F126LOC_RS03280 | Not Available | Positive | 739974 - 740684 | 26438.4 |
| dienelactone hydrolase family protein | F126LOC_RS03285 | Not Available | Positive | 740853 - 742031 | 43799.0 |
| hypothetical protein | F126LOC_RS03290 | Not Available | Positive | 742344 - 744056 | 65799.0 |
| mmge/prpd family protein | F126LOC_RS03295 | Not Available | Negative | 744190 - 745518 | 47038.7 |
| helix-turn-helix transcriptional regulator | F126LOC_RS03300 | Not Available | Negative | 745626 - 746609 | 36884.4 |
| tonb-dependent siderophore receptor | F126LOC_RS03305 | Not Available | Positive | 747033 - 749327 | 83392.9 |
| arsr/smtb family transcription factor | F126LOC_RS03310 | Not Available | Negative | 749434 - 749745 | 11549.1 |
| rtcb family protein | F126LOC_RS03315 | Not Available | Positive | 750006 - 751406 | 51180.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
