Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 1,6-anhydro-n-acetylmuramyl-l-alanine amidase ampd | F126LOC_RS03220 | Not Available | Positive | 723248 - 723820 | 21229.9 |
| beta-lactamase regulator ampe | F126LOC_RS03225 | Not Available | Positive | 723820 - 724674 | 31793.1 |
| family 43 glycosylhydrolase | F126LOC_RS03230 | Not Available | Negative | 724711 - 725667 | 36561.9 |
| glycoside-pentoside-hexuronide (gph):cation symporter | F126LOC_RS03235 | Not Available | Negative | 725645 - 727078 | 53452.0 |
| amino acid permease | F126LOC_RS03240 | Not Available | Negative | 727268 - 728626 | 48930.4 |
| pyruvate dehydrogenase complex transcriptional repressor pdhr | F126LOC_RS03245 | Not Available | Positive | 729309 - 730073 | 29159.0 |
| pyruvate dehydrogenase (acetyl-transferring), homodimeric type | F126LOC_RS03250 | Not Available | Positive | 730215 - 732878 | 99709.9 |
| pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase | F126LOC_RS03255 | Not Available | Positive | 732893 - 734776 | 65554.0 |
| dihydrolipoyl dehydrogenase | F126LOC_RS03260 | Not Available | Positive | 734991 - 736415 | 50492.1 |
| lysr family transcriptional regulator | F126LOC_RS03265 | Not Available | Negative | 736478 - 737374 | 32909.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
