Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 8-oxo-dgtp diphosphatase mutt | F126LOC_RS03170 | Not Available | Positive | 713894 - 714289 | 15047.8 |
| dna gyrase inhibitor yacg | F126LOC_RS03175 | Not Available | Negative | 714354 - 714548 | 7445.66 |
| cell division protein zapd | F126LOC_RS03180 | Not Available | Negative | 714622 - 715374 | 28846.0 |
| dephospho-coa kinase | F126LOC_RS03185 | Not Available | Negative | 715367 - 715993 | 22926.3 |
| gmp reductase | F126LOC_RS03190 | Not Available | Positive | 716286 - 717326 | 37200.0 |
| protein transport protein hofc | F126LOC_RS03195 | Not Available | Negative | 717441 - 718646 | 45232.0 |
| type ii secretion system protein gspe | F126LOC_RS03200 | Not Available | Negative | 718643 - 720151 | 55177.4 |
| prepilin peptidase-dependent pilin | F126LOC_RS03205 | Not Available | Negative | 720154 - 720600 | 15608.7 |
| carboxylating nicotinate-nucleotide diphosphorylase | F126LOC_RS03210 | Not Available | Negative | 720916 - 721806 | 32132.3 |
| nucleoside-specific channel-forming protein tsx | F126LOC_RS03215 | Not Available | Negative | 721951 - 722811 | 32199.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
