Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| undecaprenyldiphospho-muramoylpentapeptide beta-n-acetylglucosaminyltransferase | F126LOC_RS03120 | Not Available | Positive | 701962 - 703053 | 38569.9 |
| udp-n-acetylmuramate--l-alanine ligase | F126LOC_RS03125 | Not Available | Positive | 703116 - 704576 | 52971.2 |
| d-alanine--d-alanine ligase | F126LOC_RS03130 | Not Available | Positive | 704585 - 705505 | 32792.3 |
| cell division protein ftsq | F126LOC_RS03135 | Not Available | Positive | 705507 - 706349 | 31747.0 |
| cell division protein ftsa | F126LOC_RS03140 | Not Available | Positive | 706403 - 707659 | 45263.5 |
| cell division protein ftsz | F126LOC_RS03145 | Not Available | Positive | 707728 - 708879 | 40451.5 |
| udp-3-o-acyl-n-acetylglucosamine deacetylase | F126LOC_RS03150 | Not Available | Positive | 708984 - 709901 | 33960.9 |
| duf721 domain-containing protein | F126LOC_RS03155 | Not Available | Negative | 709920 - 710447 | 19501.6 |
| seca translation cis-regulator secm | F126LOC_RS03160 | Not Available | Positive | 710474 - 710989 | 19111.8 |
| preprotein translocase subunit seca | F126LOC_RS03165 | Not Available | Positive | 711102 - 713804 | 102329.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
