Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| l-alanine exporter alae | F126LOC_RS03070 | Not Available | Negative | 690696 - 691133 | 16201.0 |
| division/cell wall cluster transcriptional repressor mraz | F126LOC_RS03075 | Not Available | Positive | 692026 - 692484 | 17614.2 |
| 16s rrna (cytosine(1402)-n(4))-methyltransferase rsmh | F126LOC_RS03080 | Not Available | Positive | 692487 - 693431 | 34760.9 |
| cell division protein ftsl | F126LOC_RS03085 | Not Available | Positive | 693428 - 693748 | 11972.7 |
| peptidoglycan glycosyltransferase ftsi | F126LOC_RS03090 | Not Available | Positive | 693772 - 695535 | 63690.9 |
| udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligase | F126LOC_RS03095 | Not Available | Positive | 695522 - 697009 | 53152.5 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | F126LOC_RS03100 | Not Available | Positive | 697006 - 698367 | 47765.4 |
| phospho-n-acetylmuramoyl-pentapeptide- transferase | F126LOC_RS03105 | Not Available | Positive | 698361 - 699443 | 39802.0 |
| udp-n-acetylmuramoyl-l-alanine--d-glutamate ligase | F126LOC_RS03110 | Not Available | Positive | 699447 - 700763 | 47231.5 |
| cell division protein ftsw | F126LOC_RS03115 | Not Available | Positive | 700763 - 701965 | 44238.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
