Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thiamine/thiamine pyrophosphate abc transporter permease thip | F126LOC_RS02975 | Not Available | Negative | 667945 - 669552 | 59513.7 |
| thiamine abc transporter substrate binding subunit | F126LOC_RS02980 | Not Available | Negative | 669528 - 670511 | 36485.5 |
| hth-type transcriptional regulator sgrr | F126LOC_RS02985 | Not Available | Negative | 670726 - 672384 | 64726.6 |
| glucose uptake inhibitor sgrt | F126LOC_RS02990 | Not Available | Positive | 672475 - 672639 | 6784.13 |
| helix-turn-helix transcriptional regulator | F126LOC_RS02995 | Not Available | Negative | 672803 - 673363 | 20182.9 |
| hypothetical protein | F126LOC_RS22290 | Not Available | Negative | 673392 - 673619 | 8554.3 |
| tryptophanase | F126LOC_RS03000 | Not Available | Negative | 673820 - 675220 | 51943.5 |
| tryptophanase leader peptide | F126LOC_RS03005 | Not Available | Negative | 675317 - 675427 | 4260.07 |
| methyl-accepting chemotaxis protein | F126LOC_RS03010 | Not Available | Positive | 675972 - 677591 | 58241.2 |
| arac family transcriptional regulator | F126LOC_RS03015 | Not Available | Positive | 677802 - 678638 | 31659.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
