Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type 3 dihydrofolate reductase | F126LOC_RS02875 | Not Available | Positive | 643227 - 643709 | 17996.2 |
| lysr family transcriptional regulator | F126LOC_RS02880 | Not Available | Negative | 643791 - 644696 | 33756.9 |
| dmt family transporter | F126LOC_RS02885 | Not Available | Positive | 644807 - 645331 | 17906.6 |
| hypothetical protein | F126LOC_RS02890 | Not Available | Positive | 645473 - 645667 | 6844.09 |
| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) apah | F126LOC_RS02895 | Not Available | Negative | 645708 - 646577 | 32148.3 |
| co2+/mg2+ efflux protein apag | F126LOC_RS02900 | Not Available | Negative | 646580 - 646957 | 14029.7 |
| 16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsma | F126LOC_RS02905 | Not Available | Negative | 646970 - 647788 | 30608.0 |
| 4-hydroxythreonine-4-phosphate dehydrogenase pdxa | F126LOC_RS02910 | Not Available | Negative | 647781 - 648782 | 35473.0 |
| peptidylprolyl isomerase sura | F126LOC_RS02915 | Not Available | Negative | 648782 - 650077 | 47571.8 |
| lps assembly protein lptd | F126LOC_RS02920 | Not Available | Negative | 650180 - 652543 | 89546.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
