Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isoleucine--trna ligase | F126LOC_RS02825 | Not Available | Positive | 630262 - 633075 | 104713.0 |
| signal peptidase ii | F126LOC_RS02830 | Not Available | Positive | 633072 - 633587 | 19076.3 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | F126LOC_RS02835 | Not Available | Positive | 633587 - 634060 | 17045.1 |
| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | F126LOC_RS02840 | Not Available | Positive | 634041 - 634991 | 34694.4 |
| 4-hydroxy-tetrahydrodipicolinate reductase | F126LOC_RS02845 | Not Available | Positive | 635334 - 636155 | 28853.6 |
| glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit | F126LOC_RS02850 | Not Available | Positive | 636602 - 637750 | 41461.3 |
| carbamoyl-phosphate synthase large subunit | F126LOC_RS02855 | Not Available | Positive | 637765 - 640989 | 117865.0 |
| lyse family transporter | F126LOC_RS02860 | Not Available | Negative | 641076 - 641690 | 22299.3 |
| threonine/serine exporter family protein | F126LOC_RS02865 | Not Available | Positive | 641894 - 642667 | 27649.5 |
| threonine/serine exporter | F126LOC_RS02870 | Not Available | Positive | 642658 - 643128 | 16855.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
