Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2,3-diphosphoglycerate-dependent phosphoglycerate mutase gpmb | F126LOC_RS02720 | Not Available | Positive | 606441 - 607091 | 23809.7 |
| mdr efflux pump acrab transcriptional activator roba | F126LOC_RS02725 | Not Available | Negative | 607080 - 607967 | 33962.5 |
| protein crea | F126LOC_RS02730 | Not Available | Positive | 608173 - 608655 | 17091.6 |
| two-component system response regulator arca | F126LOC_RS02735 | Not Available | Negative | 608711 - 609427 | 27185.6 |
| trna/rrna methyltransferase | F126LOC_RS02740 | Not Available | Positive | 610179 - 610865 | 25385.7 |
| bifunctional aspartate kinase/homoserine dehydrogenase i | F126LOC_RS02750 | Not Available | Positive | 611291 - 613750 | 88737.8 |
| homoserine kinase | F126LOC_RS02755 | Not Available | Positive | 613753 - 614682 | 33142.9 |
| threonine synthase | F126LOC_RS02760 | Not Available | Positive | 614686 - 615975 | 47190.3 |
| peroxide stress protein yaaa | F126LOC_RS02765 | Not Available | Negative | 616165 - 616938 | 29116.8 |
| transaldolase | F126LOC_RS02770 | Not Available | Positive | 617252 - 618205 | 35339.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
