Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (adenosine(37)-n6)-threonylcarbamoyltransferase complex atpase subunit type 1 tsae | F126LOC_RS02520 | Not Available | Positive | 560994 - 561476 | 17381.7 |
| n-acetylmuramoyl-l-alanine amidase amib | F126LOC_RS02525 | Not Available | Positive | 561473 - 563143 | 59425.9 |
| dna mismatch repair endonuclease mutl | F126LOC_RS02530 | Not Available | Positive | 563195 - 565204 | 73928.8 |
| trna (adenosine(37)-n6)-dimethylallyltransferase miaa | F126LOC_RS02535 | Not Available | Positive | 565197 - 566138 | 34987.1 |
| rna chaperone hfq | F126LOC_RS02540 | Not Available | Positive | 566252 - 566551 | 10935.8 |
| ribosome rescue gtpase hflx | F126LOC_RS02545 | Not Available | Positive | 566646 - 567926 | 48273.9 |
| ftsh protease activity modulator hflk | F126LOC_RS02550 | Not Available | Positive | 568023 - 569282 | 45739.5 |
| protease modulator hflc | F126LOC_RS02555 | Not Available | Positive | 569286 - 570281 | 37512.8 |
| duf2065 domain-containing protein | F126LOC_RS02560 | Not Available | Positive | 570406 - 570606 | 7316.5 |
| adenylosuccinate synthase | F126LOC_RS02565 | Not Available | Positive | 570706 - 572004 | 47010.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
