Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | F126LOC_RS02470 | Not Available | Positive | 547595 - 548842 | 44412.8 |
| tolc family protein | F126LOC_RS02475 | Not Available | Positive | 548835 - 550301 | 54404.5 |
| efflux rnd transporter periplasmic adaptor subunit | F126LOC_RS02480 | Not Available | Positive | 550294 - 551559 | 46394.6 |
| hypothetical protein | F126LOC_RS02485 | Not Available | Negative | 551725 - 552522 | 29185.7 |
| hypothetical protein | F126LOC_RS02490 | Not Available | Negative | 552621 - 553073 | 15964.0 |
| duf4153 domain-containing protein | F126LOC_RS02495 | Not Available | Positive | 553595 - 555244 | 60523.5 |
| alkyl hydroperoxide reductase subunit c | F126LOC_RS02500 | Not Available | Positive | 555355 - 555918 | 20868.6 |
| alkyl hydroperoxide reductase subunit f | F126LOC_RS02505 | Not Available | Positive | 556048 - 557610 | 55835.8 |
| trna epoxyqueuosine(34) reductase queg | F126LOC_RS02510 | Not Available | Negative | 558137 - 559276 | 43253.2 |
| bifunctional adp-dependent nad(p)h-hydrate dehydratase/nad(p)h-hydrate epimerase | F126LOC_RS02515 | Not Available | Positive | 559420 - 560988 | 55840.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
