Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | F126LOC_RS02370 | Not Available | Positive | 527183 - 528397 | 41568.0 |
| yjjg family noncanonical pyrimidine nucleotidase | F126LOC_RS02375 | Not Available | Positive | 528412 - 529107 | 25599.2 |
| type ii toxin-antitoxin system rele/pare family toxin | F126LOC_RS02380 | Not Available | Negative | 529232 - 529561 | 13096.5 |
| ta system antitoxin pard family protein | F126LOC_RS02385 | Not Available | Negative | 529530 - 529766 | 9141.9 |
| abc transporter substrate-binding protein | F126LOC_RS02390 | Not Available | Positive | 530257 - 531276 | 36841.4 |
| abc transporter permease | F126LOC_RS02395 | Not Available | Positive | 531292 - 532056 | 28048.2 |
| abc transporter atp-binding protein | F126LOC_RS02400 | Not Available | Positive | 532053 - 532871 | 30561.1 |
| mfs transporter | F126LOC_RS02405 | Not Available | Negative | 532942 - 534108 | 40814.9 |
| lysr substrate-binding domain-containing protein | F126LOC_RS02410 | Not Available | Negative | 534127 - 535011 | 33001.6 |
| lyse family translocator | F126LOC_RS02415 | Not Available | Positive | 535262 - 535879 | 22110.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
