Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| miniconductance mechanosensitive channel mscm | F126LOC_RS02320 | Not Available | Negative | 517361 - 520684 | 124094.0 |
| archaetidylserine decarboxylase | F126LOC_RS02325 | Not Available | Negative | 520741 - 521769 | 37760.3 |
| small ribosomal subunit biogenesis gtpase rsga | F126LOC_RS02330 | Not Available | Negative | 521914 - 522963 | 39049.5 |
| oligoribonuclease | F126LOC_RS02335 | Not Available | Positive | 523147 - 523689 | 20672.6 |
| Trna-gly | Not Available | Not Available | Positive | 523906 - 523981 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 524058 - 524133 | Not Available |
| hypothetical protein | F126LOC_RS02350 | Not Available | Positive | 524643 - 525188 | 19772.9 |
| dimethylsulfonioproprionate lyase family protein | F126LOC_RS02355 | Not Available | Negative | 525240 - 525875 | 23596.2 |
| arsr/smtb family transcription factor | F126LOC_RS02360 | Not Available | Positive | 526082 - 526399 | 11993.4 |
| hypothetical protein | F126LOC_RS02365 | Not Available | Negative | 526444 - 527049 | 22787.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
