Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gamma carbonic anhydrase family protein | F126LOC_RS02170 | Not Available | Negative | 478175 - 478723 | 19742.9 |
| 16s ribosomal rna | Not Available | Not Available | Positive | 479228 - 480769 | Not Available |
| Trna-glu | Not Available | Not Available | Positive | 480910 - 480985 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 481213 - 484119 | Not Available |
| 5s ribosomal rna | Not Available | Not Available | Positive | 484250 - 484365 | Not Available |
| homoserine o-acetyltransferase meta | F126LOC_RS02195 | Not Available | Positive | 484603 - 485532 | 35437.3 |
| malate synthase a | F126LOC_RS02200 | Not Available | Positive | 485815 - 487413 | 60847.8 |
| isocitrate lyase | F126LOC_RS02205 | Not Available | Positive | 487445 - 488752 | 48013.6 |
| bifunctional isocitrate dehydrogenase kinase/phosphatase | F126LOC_RS02210 | Not Available | Positive | 488801 - 490528 | 67369.8 |
| is110 family transposase | F126LOC_RS02215 | Not Available | Positive | 490841 - 491830 | 36869.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
