Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trk system potassium transporter trka | F126LOC_RS02120 | Not Available | Negative | 469981 - 471357 | 50125.5 |
| 16s rrna (cytosine(967)-c(5))-methyltransferase rsmb | F126LOC_RS02125 | Not Available | Negative | 471414 - 472703 | 48590.4 |
| methionyl-trna formyltransferase | F126LOC_RS02130 | Not Available | Negative | 472771 - 473718 | 34209.2 |
| peptide deformylase | F126LOC_RS02135 | Not Available | Negative | 473742 - 474254 | 19488.7 |
| dna-protecting protein dpra | F126LOC_RS02140 | Not Available | Positive | 474383 - 475504 | 40652.1 |
| duf494 family protein | F126LOC_RS02145 | Not Available | Positive | 475476 - 475949 | 18484.0 |
| type i dna topoisomerase | F126LOC_RS02150 | Not Available | Positive | 475970 - 476527 | 20585.9 |
| l-threonylcarbamoyladenylate synthase type 1 tsac | F126LOC_RS02155 | Not Available | Positive | 476520 - 477089 | 20804.9 |
| shikimate dehydrogenase | F126LOC_RS02160 | Not Available | Positive | 477109 - 477936 | 29580.7 |
| duf1488 domain-containing protein | F126LOC_RS02165 | Not Available | Positive | 477933 - 478190 | 10121.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
