Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Attl | Not Available | Not Available | Positive | 4036162 - 4036174 | Not Available |
| Hypothetical protein | F126LOC_RS17500 | Not Available | Negative | 4036690 - 4037259 | 20596.5 |
| Putative tail-fiber protein | F126LOC_RS17505 | Not Available | Negative | 4037271 - 4039241 | 69243.0 |
| Putative tail fiber protein | F126LOC_RS17510 | Not Available | Negative | 4039300 - 4040682 | 50242.6 |
| Hypothetical protein | F126LOC_RS17515 | Not Available | Negative | 4040685 - 4041593 | 34160.8 |
| Putative baseplate protein | F126LOC_RS17520 | Not Available | Negative | 4041586 - 4042788 | 42420.3 |
| Hypothetical protein | F126LOC_RS17525 | Not Available | Negative | 4042788 - 4043138 | 13109.8 |
| Putative baseplate protein | F126LOC_RS17530 | Not Available | Negative | 4043195 - 4043851 | 22872.1 |
| Hypothetical protein | F126LOC_RS17535 | Not Available | Negative | 4043851 - 4044738 | 33923.9 |
| Hypothetical protein | F126LOC_RS17540 | Not Available | Negative | 4044731 - 4045021 | 10742.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
