Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 50s ribosomal protein l15 | F126LOC_RS02070 | Not Available | Positive | 464094 - 464528 | 15205.6 |
| preprotein translocase subunit secy | F126LOC_RS02075 | Not Available | Positive | 464536 - 465867 | 48631.9 |
| 50s ribosomal protein l36 | F126LOC_RS02080 | Not Available | Positive | 465901 - 466017 | 4349.58 |
| 30s ribosomal protein s13 | F126LOC_RS02085 | Not Available | Positive | 466164 - 466520 | 13227.3 |
| 30s ribosomal protein s11 | F126LOC_RS02090 | Not Available | Positive | 466537 - 466926 | 13859.8 |
| 30s ribosomal protein s4 | F126LOC_RS02095 | Not Available | Positive | 466957 - 467577 | 23457.6 |
| dna-directed rna polymerase subunit alpha | F126LOC_RS02100 | Not Available | Positive | 467603 - 468592 | 36524.0 |
| 50s ribosomal protein l17 | F126LOC_RS02105 | Not Available | Positive | 468633 - 469025 | 14740.8 |
| alternative ribosome-rescue factor a | F126LOC_RS02110 | Not Available | Positive | 469233 - 469445 | 8200.86 |
| large-conductance mechanosensitive channel protein mscl | F126LOC_RS02115 | Not Available | Negative | 469476 - 469889 | 15165.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
