Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pectate lyase pela | F126LOC_RS01770 | Not Available | Negative | 414157 - 415281 | 40240.1 |
| hypothetical protein | F126LOC_RS01775 | Not Available | Positive | 416137 - 416391 | 9410.42 |
| tyrosine-type recombinase/integrase | F126LOC_RS22285 | Not Available | Positive | 416923 - 417189 | 10070.1 |
| sir2 family protein | F126LOC_RS01785 | Not Available | Positive | 418138 - 420948 | 108967.0 |
| helix-turn-helix domain-containing protein | F126LOC_RS01790 | Not Available | Negative | 421717 - 422040 | 11813.4 |
| type ii toxin-antitoxin system rele/pare family toxin | F126LOC_RS01795 | Not Available | Negative | 422024 - 422383 | 13588.5 |
| aminodeoxychorismate synthase component ii | F126LOC_RS01800 | Not Available | Positive | 422984 - 423559 | 21226.6 |
| bifunctional acetylornithine/succinyldiaminopimelate transaminase | F126LOC_RS01805 | Not Available | Positive | 423679 - 424905 | 43847.6 |
| camp-activated global transcriptional regulator crp | F126LOC_RS01810 | Not Available | Negative | 425054 - 425686 | 23572.8 |
| osmc family protein | F126LOC_RS01815 | Not Available | Positive | 426063 - 426470 | 14668.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
