Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf4297 family anti-phage-associated protein | F126LOC_RS13080 | Not Available | Negative | 2961741 - 2962952 | 46994.9 |
| Attr | Not Available | Not Available | Positive | 2976226 - 2976239 | Not Available |
| Heat shock protein | F126LOC_RS17460 | Not Available | Negative | 4030623 - 4031210 | 21692.9 |
| Dna repair protein recn | F126LOC_RS17465 | Not Available | Positive | 4031360 - 4032238 | 32172.5 |
| Dna repair protein recn | F126LOC_RS17470 | Not Available | Positive | 4032320 - 4033981 | 61522.5 |
| Outer membrane protein assembly factor bame | F126LOC_RS17475 | Not Available | Positive | 4034135 - 4034470 | 12168.8 |
| Rnfh family protein | F126LOC_RS17480 | Not Available | Negative | 4034708 - 4034998 | 10910.2 |
| Type ii toxin-antitoxin system toxin rata | F126LOC_RS17485 | Not Available | Negative | 4034979 - 4035425 | 16200.3 |
| Ssra-binding protein | F126LOC_RS17490 | Not Available | Positive | 4035581 - 4036063 | 18272.0 |
| Tmrna,resume; | Not Available | Not Available | Positive | 4036114 - 4036476 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
