Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| two-component system response regulator ompr | F126LOC_RS01570 | Not Available | Positive | 366729 - 367448 | 27355.3 |
| two-component system sensor histidine kinase envz | F126LOC_RS01575 | Not Available | Positive | 367445 - 368806 | 50503.0 |
| phosphoenolpyruvate carboxykinase (atp) | F126LOC_RS01580 | Not Available | Negative | 369146 - 370765 | 59386.2 |
| hsp33 family molecular chaperone hslo | F126LOC_RS01585 | Not Available | Negative | 370963 - 371832 | 32370.2 |
| ribosome-associated heat shock protein hsp15 | F126LOC_RS01590 | Not Available | Negative | 371948 - 372358 | 15712.8 |
| gmp/imp nucleotidase | F126LOC_RS01595 | Not Available | Negative | 372477 - 373163 | 26294.0 |
| intracellular growth attenuator family protein | F126LOC_RS01600 | Not Available | Negative | 373281 - 375428 | 80099.3 |
| adp compounds hydrolase nude | F126LOC_RS01605 | Not Available | Positive | 375866 - 376423 | 21177.6 |
| duf1593 domain-containing protein | F126LOC_RS01610 | Not Available | Positive | 376655 - 378079 | 52632.4 |
| peptidoglycan glycosyltransferase/peptidoglycan dd-transpeptidase mrca | F126LOC_RS01615 | Not Available | Negative | 378199 - 380754 | 93029.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
