Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcription elongation factor greb | F126LOC_RS01520 | Not Available | Positive | 353894 - 354373 | 18707.2 |
| hpch/hpai aldolase/citrate lyase family protein | F126LOC_RS01525 | Not Available | Negative | 354456 - 355337 | 33144.3 |
| iuca/iucc family protein | F126LOC_RS01530 | Not Available | Positive | 355588 - 357489 | 72726.3 |
| tonb-dependent receptor | F126LOC_RS01535 | Not Available | Positive | 357571 - 359766 | 78167.3 |
| y4ya family plp-dependent enzyme | F126LOC_RS01540 | Not Available | Positive | 359808 - 361211 | 51681.7 |
| plp-dependent cysteine synthase family protein | F126LOC_RS01545 | Not Available | Positive | 361225 - 362241 | 35961.0 |
| nad/nadp-dependent octopine/nopaline dehydrogenase family protein | F126LOC_RS01550 | Not Available | Positive | 362252 - 363421 | 43245.1 |
| mfs transporter | F126LOC_RS01555 | Not Available | Positive | 363482 - 364732 | 44663.1 |
| abc transporter substrate-binding protein | F126LOC_RS01560 | Not Available | Positive | 364725 - 365885 | 43973.8 |
| parb n-terminal domain-containing protein | F126LOC_RS01565 | Not Available | Positive | 365954 - 366364 | 15546.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
