Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | F126LOC_RS01470 | Not Available | Positive | 339955 - 340434 | 17574.5 |
| abc transporter atp-binding protein | F126LOC_RS01475 | Not Available | Positive | 340443 - 341135 | 25293.5 |
| ftsx-like permease family protein | F126LOC_RS01480 | Not Available | Positive | 341132 - 342547 | 50448.3 |
| 5-dehydro-4-deoxy-d-glucuronate isomerase | F126LOC_RS01485 | Not Available | Negative | 342668 - 343504 | 31328.6 |
| 2-keto-3-deoxygluconate transporter | F126LOC_RS01490 | Not Available | Negative | 343517 - 344473 | 32533.8 |
| iclr family transcriptional regulator | F126LOC_RS01495 | Not Available | Negative | 344825 - 345613 | 29544.0 |
| tex family protein | F126LOC_RS01500 | Not Available | Negative | 345836 - 348169 | 85178.7 |
| citrate synthase | F126LOC_RS01505 | Not Available | Positive | 348531 - 349817 | 47752.5 |
| methyl-accepting chemotaxis protein | F126LOC_RS01510 | Not Available | Negative | 349877 - 351544 | 59562.2 |
| lysophospholipid acyltransferase family protein | F126LOC_RS01515 | Not Available | Negative | 352017 - 353720 | 64385.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
