Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mfs transporter | F126LOC_RS22220 | Not Available | Negative | 5042016 - 5043518 | 52676.6 |
| tetr/acrr family transcriptional regulator | F126LOC_RS22225 | Not Available | Positive | 5043622 - 5044173 | 20081.6 |
| winged helix-turn-helix transcriptional regulator | F126LOC_RS22230 | Not Available | Negative | 5044204 - 5044614 | 15239.6 |
| sdr family oxidoreductase | F126LOC_RS22235 | Not Available | Positive | 5044757 - 5045608 | 29382.0 |
| alpha/beta hydrolase | F126LOC_RS22240 | Not Available | Positive | 5045737 - 5046003 | 10060.8 |
| helix-turn-helix domain-containing protein | F126LOC_RS22245 | Not Available | Positive | 5046196 - 5046465 | 10062.9 |
| type ii toxin-antitoxin system hipa family toxin | F126LOC_RS22250 | Not Available | Positive | 5046465 - 5047784 | 49400.5 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnme | F126LOC_RS22255 | Not Available | Negative | 5047817 - 5049181 | 49234.7 |
| membrane protein insertase yidc | F126LOC_RS22260 | Not Available | Negative | 5049311 - 5050945 | 60941.8 |
| membrane protein insertion efficiency factor yidd | F126LOC_RS22265 | Not Available | Negative | 5050948 - 5051205 | 9486.77 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
