Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid abc transporter permease | F126LOC_RS22170 | Not Available | Positive | 5031775 - 5032503 | 26777.6 |
| is110 family transposase | F126LOC_RS22175 | Not Available | Positive | 5032784 - 5033770 | 36132.3 |
| 6-phosphogluconate phosphatase | F126LOC_RS22180 | Not Available | Negative | 5033978 - 5034646 | 25154.3 |
| ncs2 family permease | F126LOC_RS22185 | Not Available | Positive | 5034892 - 5036229 | 46661.7 |
| 4'-phosphopantetheinyl transferase family protein | F126LOC_RS22190 | Not Available | Negative | 5036285 - 5037028 | 27871.7 |
| 4fe-4s dicluster domain-containing protein | F126LOC_RS22195 | Not Available | Negative | 5037218 - 5037739 | 18642.4 |
| formate-dependent uric acid utilization protein aega | F126LOC_RS22200 | Not Available | Negative | 5037736 - 5039760 | 73488.1 |
| csgg/hfab family protein | F126LOC_RS22205 | Not Available | Positive | 5040188 - 5040859 | 24027.5 |
| duf4810 domain-containing protein | F126LOC_RS22210 | Not Available | Positive | 5040878 - 5041237 | 13268.0 |
| duf799 domain-containing protein | F126LOC_RS22215 | Not Available | Positive | 5041234 - 5041893 | 23374.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
