Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| f0f1 atp synthase subunit a | F126LOC_RS21970 | Not Available | Positive | 4992004 - 4992804 | 29568.2 |
| f0f1 atp synthase subunit c | F126LOC_RS21975 | Not Available | Positive | 4992854 - 4993093 | 8211.64 |
| f0f1 atp synthase subunit b | F126LOC_RS21980 | Not Available | Positive | 4993157 - 4993627 | 17298.9 |
| f0f1 atp synthase subunit delta | F126LOC_RS21985 | Not Available | Positive | 4993642 - 4994175 | 19364.5 |
| f0f1 atp synthase subunit alpha | F126LOC_RS21990 | Not Available | Positive | 4994188 - 4995729 | 55308.2 |
| f0f1 atp synthase subunit gamma | F126LOC_RS21995 | Not Available | Positive | 4995782 - 4996645 | 31418.1 |
| f0f1 atp synthase subunit beta | F126LOC_RS22000 | Not Available | Positive | 4996693 - 4998075 | 50230.4 |
| f0f1 atp synthase subunit epsilon | F126LOC_RS22005 | Not Available | Positive | 4998095 - 4998514 | 15256.4 |
| is4 family transposase | F126LOC_RS22010 | Not Available | Positive | 4998695 - 5000005 | 49615.9 |
| pectate disaccharide-lyase pelx | F126LOC_RS22015 | Not Available | Negative | 5000335 - 5002569 | 80231.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
