Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| quorum sensing histidine kinase qsec | F126LOC_RS21920 | Not Available | Positive | 4979180 - 4980538 | 51187.5 |
| low affinity potassium transporter kup | F126LOC_RS21925 | Not Available | Negative | 4980668 - 4982536 | 69037.1 |
| atpase rava | F126LOC_RS21930 | Not Available | Positive | 4982871 - 4984370 | 57643.3 |
| atpase rava stimulator viaa | F126LOC_RS21935 | Not Available | Positive | 4984377 - 4985855 | 56585.2 |
| aspartate--ammonia ligase | F126LOC_RS21940 | Not Available | Negative | 4985852 - 4986844 | 36943.2 |
| transcriptional regulator asnc | F126LOC_RS21945 | Not Available | Positive | 4987051 - 4987458 | 15170.6 |
| fmn-binding protein mioc | F126LOC_RS21950 | Not Available | Positive | 4987548 - 4987991 | 15962.8 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmg | F126LOC_RS21955 | Not Available | Positive | 4988382 - 4990271 | 70027.9 |
| 16s rrna (guanine(527)-n(7))-methyltransferase rsmg | F126LOC_RS21960 | Not Available | Positive | 4990354 - 4990974 | 23192.2 |
| f0f1 atp synthase subunit i | F126LOC_RS21965 | Not Available | Positive | 4991598 - 4991981 | 13451.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
