Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-glu | Not Available | Not Available | Positive | 4969673 - 4969748 | Not Available |
| 16s ribosomal rna | Not Available | Not Available | Positive | 4969889 - 4971430 | Not Available |
| ribose operon transcriptional repressor rbsr | F126LOC_RS21880 | Not Available | Negative | 4971859 - 4972854 | 37069.8 |
| ribokinase | F126LOC_RS21885 | Not Available | Negative | 4972858 - 4973784 | 32514.7 |
| ribose abc transporter substrate-binding protein rbsb | F126LOC_RS21890 | Not Available | Negative | 4973856 - 4974743 | 30694.2 |
| ribose abc transporter permease | F126LOC_RS21895 | Not Available | Negative | 4974769 - 4975737 | 33419.8 |
| ribose abc transporter atp-binding protein rbsa | F126LOC_RS21900 | Not Available | Negative | 4975745 - 4977250 | 55039.0 |
| d-ribose pyranase | F126LOC_RS21905 | Not Available | Negative | 4977258 - 4977677 | 15017.0 |
| ygiw/ydei family stress tolerance ob fold protein | F126LOC_RS21910 | Not Available | Negative | 4977882 - 4978277 | 14209.7 |
| quorum sensing response regulator transcription factor qseb | F126LOC_RS21915 | Not Available | Positive | 4978521 - 4979183 | 24352.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
