Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-aminoacyl-trna deacylase | F126LOC_RS21770 | Not Available | Negative | 4947503 - 4947940 | 15819.9 |
| glucose-1-phosphatase | F126LOC_RS21775 | Not Available | Negative | 4948005 - 4948616 | 22831.2 |
| ribosome-dependent gtpase typa | F126LOC_RS21780 | Not Available | Negative | 4948779 - 4950602 | 67225.4 |
| glutamate--ammonia ligase | F126LOC_RS21785 | Not Available | Positive | 4950972 - 4952381 | 51729.4 |
| nitrogen regulation protein nr(ii) | F126LOC_RS21790 | Not Available | Positive | 4952724 - 4953773 | 38339.9 |
| nitrogen regulation protein nr(i) | F126LOC_RS21795 | Not Available | Positive | 4953782 - 4955194 | 52489.2 |
| yshb family small membrane protein | F126LOC_RS21800 | Not Available | Positive | 4955338 - 4955475 | 4400.27 |
| hypothetical protein | F126LOC_RS21805 | Not Available | Negative | 4955654 - 4955902 | 9423.38 |
| oxygen-independent coproporphyrinogen iii oxidase | F126LOC_RS21810 | Not Available | Negative | 4955961 - 4957334 | 52310.4 |
| hypothetical protein | F126LOC_RS21815 | Not Available | Negative | 4957481 - 4957657 | 7415.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
