Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1266 domain-containing protein | F126LOC_RS21620 | Not Available | Positive | 4906128 - 4906856 | 28097.0 |
| j domain-containing protein | F126LOC_RS21625 | Not Available | Positive | 4906856 - 4909585 | 104562.0 |
| molecular chaperone hscc | F126LOC_RS21630 | Not Available | Negative | 4909630 - 4911321 | 62737.5 |
| duf2623 domain-containing protein | F126LOC_RS21635 | Not Available | Positive | 4911542 - 4911835 | 11149.9 |
| energy transducer tonb | F126LOC_RS21640 | Not Available | Negative | 4911846 - 4912667 | 29373.3 |
| fecr domain-containing protein | F126LOC_RS21645 | Not Available | Negative | 4912869 - 4913858 | 36769.5 |
| sigma-70 family rna polymerase sigma factor | F126LOC_RS21650 | Not Available | Negative | 4913855 - 4914367 | 19612.8 |
| tonb-dependent receptor | F126LOC_RS21655 | Not Available | Negative | 4914547 - 4917096 | 92572.4 |
| oligopeptidase a | F126LOC_RS21660 | Not Available | Positive | 4917418 - 4919460 | 76662.3 |
| 16s rrna (guanine(1516)-n(2))-methyltransferase rsmj | F126LOC_RS21665 | Not Available | Positive | 4919457 - 4920203 | 26895.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
