Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system hipa family toxin | F126LOC_RS21570 | Not Available | Positive | 4897693 - 4898733 | 39680.0 |
| lyse family translocator | F126LOC_RS21575 | Not Available | Negative | 4898793 - 4899416 | 22816.6 |
| thiol:disulfide interchange protein dsbg | F126LOC_RS21580 | Not Available | Positive | 4899684 - 4900439 | 27743.4 |
| siderophore-interacting protein | F126LOC_RS21585 | Not Available | Negative | 4900473 - 4901378 | 33585.5 |
| type ii toxin-antitoxin system phd/yefm family antitoxin | F126LOC_RS21590 | Not Available | Positive | 4901633 - 4901884 | 9117.98 |
| type ii toxin-antitoxin system rele family toxin | F126LOC_RS21595 | Not Available | Positive | 4901881 - 4902168 | 11074.8 |
| glutathione-disulfide reductase | F126LOC_RS21600 | Not Available | Negative | 4902286 - 4903638 | 48740.2 |
| 23s rrna (adenine(2030)-n(6))-methyltransferase rlmj | F126LOC_RS21605 | Not Available | Negative | 4903767 - 4904609 | 32119.8 |
| tfox/sxy family protein | F126LOC_RS21610 | Not Available | Negative | 4904890 - 4905273 | 14158.1 |
| alkyl sulfatase dimerization domain-containing protein | F126LOC_RS21615 | Not Available | Negative | 4905395 - 4905925 | 19433.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
