Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tigr04028 family abc transporter substrate-binding protein | F126LOC_RS21520 | Not Available | Positive | 4888021 - 4889658 | 59386.3 |
| abc transporter permease | F126LOC_RS21525 | Not Available | Positive | 4889686 - 4890630 | 33775.2 |
| abc transporter permease | F126LOC_RS21530 | Not Available | Positive | 4890627 - 4891487 | 30809.1 |
| dipeptide abc transporter atp-binding protein | F126LOC_RS21535 | Not Available | Positive | 4891484 - 4893163 | 61644.9 |
| putative fmn-dependent luciferase-like monooxygenase | F126LOC_RS21540 | Not Available | Positive | 4893179 - 4894213 | 37186.3 |
| alkylhydroperoxidase domain protein | F126LOC_RS21545 | Not Available | Positive | 4894210 - 4895343 | 41656.0 |
| phenolic acid decarboxylase | F126LOC_RS21550 | Not Available | Negative | 4895400 - 4895912 | 19643.1 |
| lysr family transcriptional regulator | F126LOC_RS21555 | Not Available | Positive | 4896012 - 4896884 | 32545.1 |
| helix-turn-helix domain-containing protein | F126LOC_RS21560 | Not Available | Positive | 4897071 - 4897397 | 11752.2 |
| hipa n-terminal domain-containing protein | F126LOC_RS21565 | Not Available | Positive | 4897382 - 4897696 | 11899.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
