Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-xylose abc transporter substrate-binding protein | F126LOC_RS21420 | Not Available | Negative | 4862240 - 4863235 | 35592.9 |
| xylose isomerase | F126LOC_RS21425 | Not Available | Positive | 4863588 - 4864907 | 49511.3 |
| xylulokinase | F126LOC_RS21430 | Not Available | Positive | 4864980 - 4866437 | 52699.0 |
| acyltransferase | F126LOC_RS21435 | Not Available | Negative | 4866469 - 4867461 | 36869.2 |
| aldehyde dehydrogenase family protein | F126LOC_RS21440 | Not Available | Negative | 4867679 - 4869214 | 55979.2 |
| formate dehydrogenase accessory sulfurtransferase fdhd | F126LOC_RS21445 | Not Available | Positive | 4869433 - 4870266 | 29627.5 |
| superoxide dismutase | F126LOC_RS21450 | Not Available | Positive | 4870502 - 4871128 | 22968.0 |
| methyl-accepting chemotaxis protein | F126LOC_RS21455 | Not Available | Positive | 4871428 - 4873320 | 68291.0 |
| yibl family ribosome-associated protein | F126LOC_RS21460 | Not Available | Negative | 4873416 - 4873778 | 13576.7 |
| mltr family transcriptional regulator | F126LOC_RS21465 | Not Available | Negative | 4873905 - 4874489 | 21699.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
