Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rhodanese-like domain-containing protein | F126LOC_RS21370 | Not Available | Negative | 4851008 - 4851397 | 14071.6 |
| transcriptional regulator ftra | F126LOC_RS21375 | Not Available | Positive | 4851517 - 4852512 | 36124.4 |
| pectinesterase pemb | F126LOC_RS21380 | Not Available | Positive | 4852517 - 4853719 | 44360.6 |
| helix-turn-helix transcriptional regulator | F126LOC_RS21385 | Not Available | Positive | 4854067 - 4854795 | 27968.0 |
| acyl-homoserine-lactone synthase cari | F126LOC_RS21390 | Not Available | Negative | 4854779 - 4855429 | 25140.0 |
| argininosuccinate synthase | F126LOC_RS21395 | Not Available | Negative | 4855699 - 4857045 | 49999.3 |
| dj-1/pfpi family protein | F126LOC_RS21400 | Not Available | Positive | 4857458 - 4858033 | 21219.6 |
| d-xylose utilization transcriptional activator xylr | F126LOC_RS21405 | Not Available | Negative | 4858104 - 4859282 | 44747.6 |
| xylose abc transporter permease xylh | F126LOC_RS21410 | Not Available | Negative | 4859419 - 4860549 | 39741.9 |
| xylose abc transporter atp-binding protein | F126LOC_RS21415 | Not Available | Negative | 4860578 - 4862119 | 56779.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
