Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioesterase family protein | F126LOC_RS01275 | Not Available | Negative | 287105 - 287593 | 17749.4 |
| phospholipase a | F126LOC_RS01280 | Not Available | Positive | 287991 - 288857 | 33119.4 |
| atp-dependent dna helicase recq | F126LOC_RS01285 | Not Available | Positive | 288991 - 290817 | 68299.5 |
| threonine export protein rhtc | F126LOC_RS01290 | Not Available | Positive | 290860 - 291480 | 22702.6 |
| homoserine/homoserine lactone efflux protein | F126LOC_RS01295 | Not Available | Negative | 291549 - 292169 | 22211.0 |
| lysophospholipase l2 | F126LOC_RS01300 | Not Available | Positive | 292300 - 293337 | 39295.0 |
| sugar/pyridoxal phosphate phosphatase yigl | F126LOC_RS01305 | Not Available | Positive | 293440 - 294240 | 30047.8 |
| glycerophosphodiester phosphodiesterase | F126LOC_RS01310 | Not Available | Negative | 294301 - 295368 | 40905.6 |
| glycerol-3-phosphate transporter | F126LOC_RS01315 | Not Available | Negative | 295444 - 296793 | 49979.9 |
| anaerobic glycerol-3-phosphate dehydrogenase subunit a | F126LOC_RS01320 | Not Available | Positive | 297108 - 298775 | 60237.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
