Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fatty acid desaturase family protein | F126LOC_RS21320 | Not Available | Negative | 4841609 - 4842748 | 43992.4 |
| sterol desaturase family protein | F126LOC_RS21325 | Not Available | Negative | 4842741 - 4843865 | 42664.6 |
| phosphatase pap2 family protein | F126LOC_RS21330 | Not Available | Negative | 4843870 - 4844526 | 24201.1 |
| f390 synthetase-related protein | F126LOC_RS21335 | Not Available | Negative | 4844523 - 4845809 | 48684.6 |
| mbl fold metallo-hydrolase | F126LOC_RS21340 | Not Available | Negative | 4845806 - 4846612 | 30110.1 |
| nad-dependent epimerase/dehydratase family protein | F126LOC_RS21345 | Not Available | Negative | 4846605 - 4847633 | 38005.5 |
| 3-oxoacyl-[acyl-carrier-protein] synthase iii c-terminal domain-containing protein | F126LOC_RS21350 | Not Available | Negative | 4847630 - 4848643 | 35922.4 |
| glpm family protein | F126LOC_RS21355 | Not Available | Positive | 4848845 - 4849192 | 12857.3 |
| hypothetical protein | F126LOC_RS21360 | Not Available | Negative | 4849314 - 4849718 | 14452.3 |
| zinc dependent phospholipase c family protein | F126LOC_RS21365 | Not Available | Negative | 4849715 - 4850644 | 34088.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
