Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii toxin-antitoxin system vapc family toxin | F126LOC_RS21270 | Not Available | Positive | 4832504 - 4832944 | 16194.5 |
| hypothetical protein | F126LOC_RS21275 | Not Available | Positive | 4832977 - 4833534 | 21301.4 |
| hypothetical protein | F126LOC_RS21280 | Not Available | Negative | 4833577 - 4834122 | 20714.9 |
| hypothetical protein | F126LOC_RS21285 | Not Available | Positive | 4834236 - 4834622 | 14592.1 |
| duf596 domain-containing protein | F126LOC_RS21290 | Not Available | Positive | 4834633 - 4835016 | 14668.2 |
| ai-2e family transporter | F126LOC_RS21295 | Not Available | Negative | 4835083 - 4836282 | 43643.4 |
| fmn-dependent l-lactate dehydrogenase lldd | F126LOC_RS21300 | Not Available | Negative | 4836428 - 4837588 | 41745.6 |
| aldehyde dehydrogenase | F126LOC_RS21305 | Not Available | Negative | 4837800 - 4839239 | 51900.2 |
| lysozyme inhibitor lpri family protein | F126LOC_RS21310 | Not Available | Negative | 4839523 - 4840452 | 34526.8 |
| fatty acid desaturase family protein | F126LOC_RS21315 | Not Available | Negative | 4840512 - 4841612 | 42354.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
