Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | F126LOC_RS21220 | Not Available | Negative | 4825258 - 4825821 | 21055.5 |
| helix-turn-helix domain-containing protein | F126LOC_RS21225 | Not Available | Positive | 4826079 - 4826459 | 14753.8 |
| hypothetical protein | F126LOC_RS21230 | Not Available | Negative | 4826508 - 4827023 | 20356.3 |
| helix-turn-helix transcriptional regulator | F126LOC_RS21235 | Not Available | Positive | 4827289 - 4827522 | 8874.64 |
| hypothetical protein | F126LOC_RS21240 | Not Available | Positive | 4827660 - 4828727 | 41554.4 |
| hypothetical protein | F126LOC_RS21245 | Not Available | Positive | 4829045 - 4829731 | 26487.4 |
| hcp family type vi secretion system effector | F126LOC_RS21250 | Not Available | Negative | 4830238 - 4830717 | 18170.6 |
| hypothetical protein | F126LOC_RS21255 | Not Available | Positive | 4831427 - 4831729 | 10752.7 |
| hypothetical protein | F126LOC_RS21260 | Not Available | Negative | 4831873 - 4832064 | 7314.69 |
| type ii toxin-antitoxin system phd/yefm family antitoxin | F126LOC_RS21265 | Not Available | Positive | 4832265 - 4832507 | 8957.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
