Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isoaspartyl peptidase/l-asparaginase family protein | F126LOC_RS21175 | Not Available | Positive | 4816381 - 4817328 | 32976.9 |
| lysr family transcriptional regulator | F126LOC_RS21180 | Not Available | Positive | 4817541 - 4818449 | 33571.0 |
| yicc/yloc family endoribonuclease | F126LOC_RS21185 | Not Available | Positive | 4818548 - 4819411 | 32902.5 |
| tyrosine-type recombinase/integrase | F126LOC_RS21190 | Not Available | Positive | 4819603 - 4820865 | 48977.4 |
| hypothetical protein | F126LOC_RS21195 | Not Available | Positive | 4821075 - 4821269 | 7119.42 |
| hypothetical protein | F126LOC_RS21200 | Not Available | Positive | 4821256 - 4821447 | 6727.01 |
| hypothetical protein | F126LOC_RS21205 | Not Available | Positive | 4821670 - 4823139 | 54764.4 |
| dna adenine methylase | F126LOC_RS21210 | Not Available | Positive | 4823210 - 4824064 | 32318.8 |
| hypothetical protein | F126LOC_RS21215 | Not Available | Negative | 4824412 - 4824954 | 20927.1 |
| lysozyme inhibitor lpri family protein | F126LOC_RS22440 | Not Available | Negative | 4824924 - 4825226 | 11432.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
