Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleoid occlusion factor slma | F126LOC_RS21125 | Not Available | Positive | 4805481 - 4806077 | 23141.0 |
| orotate phosphoribosyltransferase | F126LOC_RS21130 | Not Available | Negative | 4806262 - 4806903 | 23407.2 |
| ribonuclease ph | F126LOC_RS21135 | Not Available | Negative | 4807110 - 4807826 | 25515.8 |
| l-ala-d/l-glu epimerase | F126LOC_RS21140 | Not Available | Positive | 4808031 - 4808996 | 34979.5 |
| abc transporter atp-binding protein | F126LOC_RS21145 | Not Available | Positive | 4809040 - 4810911 | 68441.6 |
| glutathione abc transporter substrate-binding protein | F126LOC_RS21150 | Not Available | Positive | 4811000 - 4812541 | 56844.4 |
| abc transporter permease | F126LOC_RS21155 | Not Available | Positive | 4812560 - 4813480 | 33839.5 |
| abc transporter permease subunit | F126LOC_RS21160 | Not Available | Positive | 4813489 - 4814388 | 32320.4 |
| p1 family peptidase | F126LOC_RS21165 | Not Available | Positive | 4814415 - 4815473 | 36845.2 |
| m55 family metallopeptidase | F126LOC_RS21170 | Not Available | Positive | 4815500 - 4816321 | 29771.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
