Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase family 2 protein | F126LOC_RS21075 | Not Available | Positive | 4797438 - 4798211 | 29537.9 |
| lipid iv(a) 3-deoxy-d-manno-octulosonic acid transferase | F126LOC_RS21080 | Not Available | Positive | 4798296 - 4799573 | 47888.6 |
| pantetheine-phosphate adenylyltransferase | F126LOC_RS21085 | Not Available | Positive | 4799612 - 4800091 | 17634.4 |
| glycosyltransferase family 9 protein | F126LOC_RS21090 | Not Available | Negative | 4800100 - 4801074 | 36970.7 |
| bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyase | F126LOC_RS21095 | Not Available | Negative | 4801141 - 4801950 | 30215.2 |
| 50s ribosomal protein l33 | F126LOC_RS21100 | Not Available | Negative | 4802166 - 4802333 | 6357.91 |
| 50s ribosomal protein l28 | F126LOC_RS21105 | Not Available | Negative | 4802345 - 4802581 | 8965.01 |
| radc family protein | F126LOC_RS21110 | Not Available | Negative | 4802819 - 4803484 | 24838.3 |
| bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabc | F126LOC_RS21115 | Not Available | Positive | 4803672 - 4804916 | 44230.5 |
| dutp diphosphatase | F126LOC_RS21120 | Not Available | Positive | 4804894 - 4805352 | 16194.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
