Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rhodanese-like domain-containing protein | F126LOC_RS21025 | Not Available | Negative | 4786457 - 4786888 | 15770.3 |
| murein hydrolase activator envc | F126LOC_RS21030 | Not Available | Positive | 4787134 - 4788435 | 48250.4 |
| divergent polysaccharide deacetylase family protein | F126LOC_RS21035 | Not Available | Positive | 4788438 - 4789385 | 35005.6 |
| l-threonine 3-dehydrogenase | F126LOC_RS21040 | Not Available | Negative | 4789437 - 4790468 | 37641.7 |
| glycine c-acetyltransferase | F126LOC_RS21045 | Not Available | Negative | 4790479 - 4791675 | 43369.1 |
| adp-glyceromanno-heptose 6-epimerase | F126LOC_RS21050 | Not Available | Positive | 4791918 - 4792850 | 34812.6 |
| adp-heptose--lps heptosyltransferase rfaf | F126LOC_RS21055 | Not Available | Positive | 4792874 - 4793923 | 38638.8 |
| lipopolysaccharide heptosyltransferase rfac | F126LOC_RS21060 | Not Available | Positive | 4793920 - 4794882 | 36150.5 |
| putative lipopolysaccharide heptosyltransferase iii | F126LOC_RS21065 | Not Available | Positive | 4794900 - 4795985 | 40690.0 |
| o-antigen ligase family protein | F126LOC_RS21070 | Not Available | Positive | 4796047 - 4797294 | 45711.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
