Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5-methyltetrahydropteroyltriglutamate-- homocysteine s-methyltransferase | F126LOC_RS20975 | Not Available | Negative | 4776378 - 4778642 | 84565.6 |
| hth-type transcriptional regulator metr | F126LOC_RS20980 | Not Available | Positive | 4778747 - 4779682 | 35150.4 |
| carboxylate/amino acid/amine transporter | F126LOC_RS20985 | Not Available | Negative | 4779588 - 4780487 | 33846.9 |
| yjeo family protein | F126LOC_RS20990 | Not Available | Negative | 4780722 - 4781054 | 12375.4 |
| hypothetical protein | F126LOC_RS20995 | Not Available | Negative | 4781055 - 4781771 | 27637.4 |
| hcp family type vi secretion system effector | F126LOC_RS21000 | Not Available | Negative | 4781788 - 4782267 | 18008.2 |
| alpha/beta hydrolase | F126LOC_RS21005 | Not Available | Negative | 4782700 - 4783170 | 18528.5 |
| serine o-acetyltransferase | F126LOC_RS21010 | Not Available | Negative | 4783659 - 4784480 | 29319.4 |
| nad(p)h-dependent glycerol-3-phosphate dehydrogenase | F126LOC_RS21015 | Not Available | Negative | 4784748 - 4785767 | 36055.6 |
| protein-export chaperone secb | F126LOC_RS21020 | Not Available | Negative | 4785767 - 4786237 | 17247.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
