Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lps translocon maturation chaperone lptm | F126LOC_RS01225 | Not Available | Positive | 276927 - 277112 | 6565.11 |
| diaminopimelate epimerase | F126LOC_RS01230 | Not Available | Positive | 277190 - 278014 | 30146.1 |
| duf484 domain-containing protein | F126LOC_RS01235 | Not Available | Positive | 278011 - 278715 | 26635.3 |
| tyrosine recombinase xerc | F126LOC_RS01240 | Not Available | Positive | 278712 - 279647 | 34625.7 |
| 5-amino-6-(5-phospho-d-ribitylamino)uracil phosphatase yigb | F126LOC_RS01245 | Not Available | Positive | 279647 - 280363 | 26940.9 |
| dna helicase ii | F126LOC_RS01250 | Not Available | Positive | 280444 - 282606 | 81776.3 |
| cyclase family protein | F126LOC_RS01255 | Not Available | Positive | 282751 - 283497 | 27638.3 |
| magnesium/cobalt transporter cora | F126LOC_RS01260 | Not Available | Positive | 283909 - 284859 | 36577.6 |
| abrb family transcriptional regulator | F126LOC_RS01265 | Not Available | Positive | 285049 - 286107 | 37471.5 |
| eama family transporter rard | F126LOC_RS01270 | Not Available | Negative | 286073 - 287002 | 35050.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
