Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 23s ribosomal rna | Not Available | Not Available | Positive | 4723159 - 4726065 | Not Available |
| Trna-glu | Not Available | Not Available | Positive | 4726293 - 4726368 | Not Available |
| 16s ribosomal rna | Not Available | Not Available | Positive | 4726509 - 4728050 | Not Available |
| menaquinone-dependent protoporphyrinogen ix dehydrogenase | F126LOC_RS20790 | Not Available | Negative | 4728443 - 4728982 | 20425.5 |
| trk system potassium transporter trkh | F126LOC_RS20795 | Not Available | Negative | 4729004 - 4730455 | 52838.9 |
| impact family protein | F126LOC_RS20800 | Not Available | Negative | 4730498 - 4731109 | 21617.2 |
| xaa-pro dipeptidase | F126LOC_RS20805 | Not Available | Negative | 4731109 - 4732440 | 50236.8 |
| fatty acid oxidation complex subunit alpha fadb | F126LOC_RS20810 | Not Available | Positive | 4732626 - 4734815 | 79164.0 |
| acetyl-coa c-acyltransferase fada | F126LOC_RS20815 | Not Available | Positive | 4734827 - 4735990 | 40918.6 |
| nad(p)h-flavin reductase | F126LOC_RS20820 | Not Available | Negative | 4736088 - 4736789 | 26106.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
