Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pectobacteriaceae
Genus
Pectobacterium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Pectobacteriaceae |
| Genus | Pectobacterium |
| Species | Pectobacterium brasiliense |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum tuberosum, Cucumis sativus, Nicotiana benthamiana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1209398 bp
Thymine Count
1213087 bp
Guanine Count
1313952 bp
Cytosine Count
1315925 bp
Genome Length
5052362 bp
Protein-coding Genes
4234 genes
Non-Coding Genes
238 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| elongation factor tu | F126LOC_RS20725 | Not Available | Negative | 4716930 - 4718114 | 43276.0 |
| Trna-thr | Not Available | Not Available | Positive | 4718222 - 4718297 | Not Available |
| Trna-gly | Not Available | Not Available | Positive | 4718304 - 4718378 | Not Available |
| Trna-tyr | Not Available | Not Available | Positive | 4718509 - 4718593 | Not Available |
| Trna-thr | Not Available | Not Available | Positive | 4718609 - 4718684 | Not Available |
| gnat family n-acetyltransferase | F126LOC_RS20750 | Not Available | Positive | 4719016 - 4719564 | 20235.3 |
| type i pantothenate kinase | F126LOC_RS20755 | Not Available | Positive | 4719776 - 4720726 | 36023.3 |
| bifunctional biotin--[acetyl-coa-carboxylase] ligase/biotin operon repressor bira | F126LOC_RS20760 | Not Available | Negative | 4720765 - 4721724 | 35141.8 |
| udp-n-acetylmuramate dehydrogenase | F126LOC_RS20765 | Not Available | Negative | 4721721 - 4722758 | 38443.1 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 4722913 - 4723028 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Soft and black rot | Causes | PMC11676143 |
| Blackleg | Causes | PMC11676143 |
| Aerial stem rot | Causes | PMC11676143 |
| Tuber soft rot | Causes | PMC11676143 |
| Soft rot | Causes | PMC13097337 |
| Blackleg | Causes | PMC7824751 |
| Soft rot | Causes | PMC7824751 |
| Soft rot of cucumber | Causes | PMC7824751 |
| Soft-rot | Causes | PMC8270676 |
| Bacterial soft rot | Causes | PMC10673545 |
